PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471403
Common NameARALYDRAFT_471403
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 181aa    MW: 20782.1 Da    PI: 9.8606
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471403genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-161668155
            CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
            +r++h+e Er+RR++i s f +Lr llP+     +++K s a+ + +Av+YIk+Lq
  471403 16 KRAKHKELERQRRQEITSLFKNLRYLLPSqY---TKGKRSSADHVLEAVNYIKDLQ 68
            79***************************66...*********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-161289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.29E-111372No hitNo description
PROSITE profilePS5088814.4051567IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-131668IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-131685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-52173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MVTSEIREGD DEPKNKRAKH KELERQRRQE ITSLFKNLRY LLPSQYTKGK RSSADHVLEA  60
VNYIKDLQKK IKEVSKKRDR IKRSITHPSS TGECSIISLT SSTCSCTCWR HTHCCYRSKL  120
LLQTRILSLK CSSTSGRRAI NALMLIVHTI VSEVEEGIEV YYSELQENII KMGTTYVVML  180
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11527KRAKHKELERQRR
26782QKKIKEVSKKRDRIKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885891e-119AF488589.1 Arabidopsis thaliana clone bHLH055 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889939.11e-130hypothetical protein ARALYDRAFT_471403
SwissprotQ9LN956e-74BH055_ARATH; Transcription factor bHLH55
TrEMBLD7KND71e-130D7KND7_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.1__1357__AT1G12540.11e-129(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.19e-67bHLH family protein